WPI Reseach Center
- Kavli Institute for the Physics and Mathematics of the Universe (Kavli IPMU), The University of Tokyo

- Institute for Integrated Cell-Material Sciences (iCeMS), Kyoto University

- Immunology Frontier Research Center (IFReC), Osaka University

- International Center for Materials Nanoarchitectonics (MANA), National Institute for Materials Science (NIMS)

- International Institute for Carbon-Neutral Energy Research (I2CNER), Kyushu University

- International Institute for Integrative Sleep Medicine (IIIS), University of Tsukuba

- Earth-Life Science Institute (ELSI), Tokyo Institute of Technology

- Institute of Transformative Bio-Molecules (ITbM),Nagoya University

- International Research Center for Neurointelligence (IRCN), The University of Tokyo

- Nano Life Science Institute (NanoLSI), Kanazawa University

- Institute for Chemical Reaction Design and Discovery (ICReDD), Hokkaido University

- Institute for the Advanced Study of Human Biology (ASHBi), Kyoto University

- International Center for Quantum-field Measurement Systems for Studies of the Universe and Particles (QUP), High Energy Accelerator Research Organization (KEK)

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